HIPAA accelerator 3.3 not recognizing Schemas

When you compile a schema(.VSD) file in your BizTalk project a lot happens.  The HIPAA acclerator 3.3(I suppose other versions) does not execute off the this schema data.

A table is created with the schema information and stored in a database for use by the accelerator at run time.

Some errors may occur when you compile the schema.  These error will not appear anywhere.  The symtom is that the other tools in BizTalk will not recognize the schema.

How to fix(good question).  It could be a problem with the install.  We had to call Micosoft and the called COVAST.

COVAST tried running the programs that run(in the background) with the schema compile.  This did not work.

COVAST purged all the data from the tables and started again and the product seem tobuild.